Bioinformatics Developer - (fixed-term employment/contract for 1 year)

A Little Bit About Us

VarSome.com is the world’s leading website for professional human genetics. With more than 4 000 citations in scientific papers, 60 000 registered professional users, we are seeking to bring together all the human expertise in molecular genetics. VarSome Clinical is a comprehensive decision support software platform for genetic testing.

VarSome is created by Saphetor, a Switzerland-based precision medicine company with offices in Lausanne, Boston, and Athens, using bioinformatics to apply human genome data to improve health and lives worldwide. 

Saphetor is pioneering the use of big-data sequencing technology, such as exome and whole-genome sequencing, for clinical practice. We are involved in both clinical research and diagnostics, providing our clients with quality analysis and interpretation of next-generation DNA sequencing (NGS) data. All our services are provided over the web, and our VarSome.com website is the world’s prime reference for genetic variant interpretation.

Role Responsibilities:

• Build and maintain a pipeline for calling variants from genomic data, both ad hoc and using modern pipelining tools like Prefect
• Ensure pipelines are reproducible, scalable, and adhere to best practices in data analysis
• Design and code robust tools for the analysis of genomic data
• Optimize existing code for efficiency and scalability

What you will bring: 

• Undergraduate degree in Bioinformatics/Computational Biology, Computer Science, or a related field. Higher degrees are a plus
• Proven experience in bioinformatics algorithm development and pipeline construction
• Proficiency in Python. Other scripting languages, e.g. Perl, are a plus
• Strong understanding of genomics, genetics and biology
• Familiarity with databases, data management, and integration techniques
• Experience with version control systems (e.g., Git) and, ideally, containerization (e.g., Docker)
• Excellent problem-solving skills and the ability to work in a collaborative, interdisciplinary environment
• At least 2 years of working experience working in a Linux environment
• Strong command of the English language, both written and spoken
• The ability to work effectively as part of a team
  
  

Your career journey with us includes, among others:

• A position in a fascinating healthcare growth domain, at the cutting edge of technology and research.
• A competitive compensation package combined with additional benefits.
• Remote work if you are based outside Athens. Hybrid work (1 day per week at the office) if you are based in Athens.
• Endless learning opportunities, while transferring new technologies from academics to clinical practice all over the world.

Saphetor is proud to be an Equal Opportunity Employer. We provide equal employment opportunities to all qualified applicants and our employees, regardless of race, color, religion, national origin, age, sex, medical condition or disability, sexual orientation, gender expression, or marital status.

In case you would be interested, please attach your CV in English.